CENTER-TBI gene-expression imputation, singularity container and definition file

2020-01-16T15:07:05Z (GMT) by Kevin Kunzmann

This repository contains the pre-build singularity [1] container (.sif) and the singularity definition file used for building it (.def).
The actual imputation is done using PrediXcan [2], for other installed software, check the definition file.

[1] https://sylabs.io/guides/3.3/user-guide/
[2] Gamazon ER†, Wheeler HE†, Shah KP†, Mozaffari SV, Aquino-Michaels K, Carroll RJ, Eyler AE, Denny JC, Nicolae DL, Cox NJ, Im HK. (2015) A gene-based association method for mapping traits using reference transcriptome data. Nat Genet. doi:10.1038/ng.3367.