FuNeL

FuNeL is a protocol to infer functional networks from machine learning models. It is a general approach that uses BioHEL, a rule-based evolutionary classifier, to describe the expression samples as a set of rules and then infers interactions between genes that act together within rules to predict the samples class. FuNeL generates co-prediction networks, that capture biological knowledge complementary to that contained in popular similarity-based co-expression networks.

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GPL 3.0+