2018-08-29T05:05:37Z (GMT) by NICHOLAS D SANDERSON

Clustering heatmap tool for kraken-style reports. Takes kraken style reports in text file format from eithr Kraken or Centrifuge (use Produces a clustermap using seaborn of top species (default) using z scores for the heatmap and euclidean centroid clustering for the dendrograms.

This work was inspired by the excellent hclust script available for metaphlan analysis, see here And Pavian see here,

This work was funded by NIHR Biomedical Research Centre at Oxford University Hospitals NHS Foundation Trust and the University of Oxford.

Gitlab repository